Webb18 feb. 2024 · set file (pl_files) from plink_data output: files test1 into result1 publishDir params.publish script: plink --bfile $pl_files --maf 0.05 --make-bed --out $test1 } process gen { input: set file (test1) from result1 output: pulishDir params.publish files test2 into result2 script: plink --bfile $test1 --geno 0.05 --make-bed --out $test2 } Webb2 apr. 2024 · $output = &"\PLINK.exe" -ssh @ -pw "my command" the thing is the command im running is like "top" in linux - a task manager which won't quit until enter is being pressed. how can i take the CLI output from that situation without touching my keyboard?

PLINK: Whole genome data analysis toolset - Harvard University

WebbIf you use plink, you are using your windows terminal, which is not able to do so and simply prints them out. On the remote host type type ls, which should print something like: ls is … Webbplink --file mydata --pheno pheno.raw --assoc --maf 0.05 --out run1 then the command plink --rerun run1.log --maf 0.1 would repeat the analysis but with the new minor allele frequency threshold of 0.1, not 0.05. Note that commands in the old LOG file can be overwritten but not removed with the rerun command. basic battery diagram

terminal - What is the problem with the output of plink? - Unix

WebbPLINK is now available for free download. Below are links to ZIP files containing binaries compilied on various platforms as well as the C/C++ source code. Linux/Unix users … Webbplink --file mydata --pheno pheno.raw --assoc --maf 0.05 --out run1 then the command plink --rerun run1.log --maf 0.1 would repeat the analysis but with the new minor allele … WebbPlink definition, to shoot, as with a rifle, at targets selected at whim: to plink at coins tossed in the air. See more. basic baumwoll langarmshirt damen